rs8075 chr8:73976381 G>C
- Sequence
gccgccgcgctccgaggtccccgg[G/C]cctctgtctcccgggcgtcctcca
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) HEK293 (embryonic kidney) HepG2 (hepatoblastoma) brain prefrontal cortex region tissues
- ASB for transcription factors
- FOXK2_HUMAN OLIG2_HUMAN ZBT8A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 2.89 | -2.77 | 1.00 | n/a | No Hit | |||
| OLIG2_HUMAN | 2.46 | -2.49 | 1.00 | 0.75 | Weak Discordant | |||
| ZBT8A_HUMAN | 1.82 | n/a | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Pancreas, Stomach, Testis