rs8100241 chr19:17282085 G>A

Sequence
gtagaggagctgctgcgctgcggc[G/A]cggaccctaatttggtgctagagg
ASB in cell types
HCT-116 (colon carcinoma)
ASB for transcription factors
ZFX_HUMAN MGAP_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZFX_HUMAN -3.52 3.34 1.007.1·10-6 1.00 n/a No Hit
MGAP_HUMAN 2.38 n/a 1.4·10-31.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

EMBL-EBI breast cancer
GRASP advanced age-related macular degeneration,  advanced age-related macular degeneration (geographic atrophy),  birth weight,  breast cancer (brca1-carriers),  breast cancer (estrogen receptor negative breast cancer),  breast cancer risk (brca1 class 1 mutations only),  breast cancer risk (brca1 class 2 mutations only),  breast cancer risk (brca1 estrogen receptor status),  breast cancer risk (brca1 estrogen receptor/progesterone receptor status),  breast cancer risk (brca1 progesterone receptor status),  breast cancer risk (excluding brca1 mutation carriers who developed ovarian cancer),  breast cancer risk (excluding breast cancer cases diagnosed with breast cancer more than 5 years prior to study recruitment),  breast cancer risk (in brca1 mutation carriers),  breast cancer risk (triple negative breast cancer)
GTEx eQTL Adipose_Subcutaneous,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Caudate_basal_ganglia,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Hypothalamus,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Testis,  Thyroid,  Whole_Blood

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