rs8101689 chr19:29694790 G>A
- Sequence
accagagggcgcctcccaccacag[G/A]tgccaggctgtgtccccagccctg
- ASB in cell types
- HEK293 (embryonic kidney) keratinocytes uterus TF-1 (erythroleukemia)
- ASB for transcription factors
- SNAI2_HUMAN ZBT26_HUMAN GATA2_HUMAN CDN1B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | 2.31 | -3.49 | 1.50 | -4.34 | Concordant | |||
| ZBT26_HUMAN | n/a | 2.37 | 3.00 | n/a | No Hit | |||
| GATA2_HUMAN | n/a | 2.46 | 3.00 | n/a | No Hit | |||
| CDN1B_HUMAN | -0.35 | 1.21 | 2.00 | n/a | n/a | |||
| JUN_HUMAN | -0.40 | 1.33 | 2.00 | n/a | No Hit |
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Motif analysis
