rs8101703 chr19:4717175 G>A
- Sequence
tcctgccctccagccagaaggggc[G/A]cagtttgttagttcagctcctcct
- ASB in cell types
- breast tumor BEAS-2B (bronchial epithelium) HS-ES-2M (Epithelioid sarcoma)
- ASB for transcription factors
- CTCF_HUMAN GCR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.68 | 0.10 | 1.57 | n/a | No Hit | |||
| GCR_HUMAN | 0.24 | 2.46 | 1.12 | 3.48 | Concordant |
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Motif analysis
Genetic associations
GRASP fasting blood glucose, homa-b, hypertension (early onset hypertension), infant head circumference
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Lung, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood