rs8102195 chr19:18416300 C>T
- Sequence
aagtgctgggattacaggcatgag[C/T]caccgcgcccggccggttttttta
- ASB in cell types
- BEAS-2B (bronchial epithelium) K562 (myelogenous leukemia)
- ASB for transcription factors
- GCR_HUMAN ATF3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | -0.10 | 3.22 | 1.22 | n/a | No Hit | |||
| ATF3_HUMAN | n/a | 3.34 | 2.00 | 6.46 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Colon_Transverse, Esophagus_Mucosa, Liver, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg