rs8102244 chr19:17395050 C>T

Sequence
gttggcagagtttaggctgccacg[C/T]cggctgtgaagaggaccggagggt
ASB in cell types
GM12890 (Lymphoblastoid Cell Lines) GM18951 (B-cells Lymphoblastoid Cell Lines) PC9 (lung adenocarcinoma) GM02630 (Fanconi anemi)
ASB for transcription factors
CTCF_HUMAN STAG1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.01 2.42 1.001.7·10-103 1.50 n/a No Hit
STAG1_HUMAN 0.47 1.75 1.005.9·10-8 1.50 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Brain_Cortex,  Brain_Nucleus_accumbens_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Sigmoid,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Nerve_Tibial,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Small_Intestine_Terminal_Ileum,  Stomach,  Thyroid,  Whole_Blood

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