rs8102339 chr19:17072596 C>T
- Sequence
cctcatgatccacccaccttggcg[C/T]ctcaaactgctgggattacaggcg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- IKZF2_HUMAN IKZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF2_HUMAN | 2.70 | -2.36 | 1.00 | n/a | n/a | |||
| IKZF1_HUMAN | 1.94 | 0.53 | 1.25 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Muscle_Skeletal, Nerve_Tibial, Testis, Whole_Blood