rs8102532 chr19:15869250 G>A
- Sequence
ggaacctctagaggacagtgtagg[G/A]aatgcactgagttattccaggaaa
- ASB in cell types
- MOLT-4 (Adult T acute lymphoblastic leukemia) MCF7L-P(immortalized breast epithelial cell line) GM02255 (Lymphoblastoid Cell Lines) MM1.S (plasma cell myeloma)
- ASB for transcription factors
- CTCF_HUMAN BRD4_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.57 | 1.02 | 1.46 | n/a | No Hit | |||
| BRD4_HUMAN | 2.28 | -0.15 | 1.50 | n/a | n/a | |||
| STAT1_HUMAN | 2.00 | -1.08 | 2.00 | 1.15 | Weak Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Hippocampus, Breast_Mammary_Tissue, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Uterus, Vagina, Whole_Blood