rs8102791 chr19:17395124 A>C
- Sequence
cttcccgcctgctcgccactgggc[A/C]gccagagggcgatcttacaacgtg
- ASB in cell types
- PC9 (lung adenocarcinoma) glioblastoma cells GM02630 (Fanconi anemi) LNCaP C4-2B (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN STAG2_HUMAN FOXK2_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.01 | 2.82 | 1.44 | 5.44 | Concordant | |||
| STAG1_HUMAN | -1.09 | 2.25 | 1.50 | n/a | n/a | |||
| STAG2_HUMAN | -0.91 | 2.37 | 1.00 | n/a | n/a | |||
| FOXK2_HUMAN | -4.25 | 2.36 | 1.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Esophagus_Mucosa, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Small_Intestine_Terminal_Ileum, Thyroid