rs8103017 chr19:55487775 C>G
- Sequence
cccattaccgaattttttccgcct[C/G]acagctgcctggtgtgcaggcagt
- ASB in cell types
- K562 (myelogenous leukemia) RH4 (alveolar rhabdomyosarcoma) BEAS-2B (bronchial epithelium) SK-N-SH (neuroblastoma)
- ASB for transcription factors
- GCR_HUMAN MEIS2_HUMAN MYOD1_HUMAN SIN3A_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | -0.33 | 0.91 | 1.43 | n/a | No Hit | |||
| MEIS2_HUMAN | n/a | 3.27 | 2.00 | 6.65 | Concordant | |||
| MYOD1_HUMAN | 0.06 | 1.48 | 1.17 | 2.30 | Concordant | |||
| SIN3A_HUMAN | -2.17 | 2.60 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Stomach, Thyroid, Whole_Blood