rs8103315 chr19:44750911 C>A

Sequence
cacaaaatcactctgcagacagtc[C/A]ctggggtcccctgctaggtgatga
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
MEF2B_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
MEF2B_HUMAN 2.27 -1.94 0.021.00 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

EMBL-EBI alzheimers disease,  alzheimers disease or family history of alzheimers disease
GRASP advanced age-related macular degeneration,  alzheimers disease,  arthritis including non-rheumatoid,  hdl cholesterol,  hdl cholesterol change with statins,  late onset alzheimers disease,  ldl cholesterol,  longstanding arthritis,  schizophrenia,  stabilized warfarin dose,  total cholesterol,  total cholesterol change with statins,  transmission distortion
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Amygdala,  Brain_Cerebellum,  Brain_Cortex,  Breast_Mammary_Tissue,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Testis,  Thyroid

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