rs8103622 chr19:18462024 C>T
- Sequence
ttggggaccctgggcgaccaagag[C/T]gccacctgctgcccaaggcaggca
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) PC9 (lung adenocarcinoma) upper lobe of left lung
- ASB for transcription factors
- CTCF_HUMAN STAT1_HUMAN ARI1B_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.45 | 0.13 | 1.53 | -1.55 | Weak Concordant | |||
| STAT1_HUMAN | 2.61 | n/a | 3.00 | n/a | No Hit | |||
| ARI1B_HUMAN | 2.81 | -5.04 | 2.00 | n/a | n/a | |||
| RAD21_HUMAN | 0.99 | 0.91 | 1.51 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP 2 hour glucose, height, ldl cholesterol, total cholesterol, urinary albumin-to-creatinine ratio, years of education
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Thyroid, Whole_Blood