rs8103655 chr19:45478197 T>C
- Sequence
accaggagaccaaggccagggctg[T/C]cacccaccgctgcgtcctcagcaa
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) foreskin keratinocyte BEAS-2B (bronchial epithelium)
- ASB for transcription factors
- GCR_HUMAN PKNX1_HUMAN CTCF_HUMAN RFX1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 0.43 | 1.29 | 1.06 | n/a | No Hit | |||
| PKNX1_HUMAN | 1.89 | -0.55 | 1.50 | -0.89 | Weak Concordant | |||
| CTCF_HUMAN | 0.56 | 1.30 | 1.20 | 2.69 | Concordant | |||
| RFX1_HUMAN | 1.99 | -0.78 | 2.00 | n/a | No Hit |
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Motif analysis
