rs8104024 chr19:45178768 A>C
- Sequence
tgaaatcacagcccttcagctgcc[A/C]cggtgagaacgcagcactcgggtt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) monocytes from periferal blood 22RV1 (prostate carcinoma) HCASMC (Human coronary artery smooth muscle cells)
- ASB for transcription factors
- FOXK2_HUMAN CREB1_HUMAN ANDR_HUMAN SRBP2_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 4.18 | 0.39 | 1.00 | n/a | No Hit | |||
| CREB1_HUMAN | 1.93 | -0.10 | 1.10 | n/a | No Hit | |||
| ANDR_HUMAN | 2.75 | 0.93 | 2.33 | n/a | No Hit | |||
| SRBP2_HUMAN | 1.66 | n/a | 3.00 | n/a | No Hit | |||
| TCF21_HUMAN | 1.97 | n/a | 2.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood