rs8105174 chr19:10236356 C>T
- Sequence
tatgtggccgtctgccaggggaac[C/T]gtggctcccagacaaaggtgatgt
- ASB in cell types
- naive IgD+ B cells GM01310 ( Transformed lymphovlasoid cell line ) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- FOXP1_HUMAN NFIA_HUMAN AHR_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXP1_HUMAN | 2.94 | -5.27 | 2.00 | n/a | No Hit | |||
| NFIA_HUMAN | n/a | 2.49 | 1.00 | -0.54 | Weak Discordant | |||
| AHR_HUMAN | -1.05 | 1.50 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Liver, Lung, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood