rs8105903 chr19:46784893 C>A
- Sequence
ccaccccatgcagcaaacttaata[C/A]cctggacagcttgcatcagccact
- ASB in cell types
- K562 (myelogenous leukemia) breast tumor monocyte-derived macrophages from peripheral blood HepG2 (hepatoblastoma)
- ASB for transcription factors
- TYY1_HUMAN CDK9_HUMAN VDR_HUMAN EGR1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | 0.01 | 2.58 | 1.50 | n/a | No Hit | |||
| CDK9_HUMAN | 1.75 | 0.66 | 1.33 | n/a | n/a | |||
| VDR_HUMAN | -2.15 | 2.95 | 2.00 | 1.84 | Weak Concordant | |||
| EGR1_HUMAN | 1.53 | 0.63 | 1.60 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP aortic valve calcium, college completion, microalbuminuria, urinary albumin-to-creatinine ratio, years of education
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood