rs8106139 chr19:17395367 T>C
- Sequence
ctccttcctgtagcctccccaagg[T/C]tcttccaccaagtgcattcccatc
- ASB in cell types
- GM12890 (Lymphoblastoid Cell Lines) LNCaP C4-2B (prostate carcinoma) GM18951 (B-cells Lymphoblastoid Cell Lines) GM12892 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.36 | 2.16 | 1.38 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP chronic kidney disease, height, infant head circumference, ldl cholesterol, neuroblastoma (brain cancer), rheumatoid arthritis, total cholesterol, triglycerides change with statins
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Esophagus_Mucosa, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Small_Intestine_Terminal_Ileum, Thyroid