rs8106212 chr19:6802560 C>T

Sequence
acatgactggaaggaagctgtctc[C/T]gggttcagctgatctccctgaggt
ASB in cell types
HCT-116 (colon carcinoma) monocytes from periferal blood
ASB for transcription factors
USF1_HUMAN SRBP2_HUMAN SPT5H_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
USF1_HUMAN -1.59 2.67 1.001.7·10-4 1.00 n/a No Hit
SRBP2_HUMAN 2.71 n/a 6.0·10-31.00 2.50 n/a No Hit
SPT5H_HUMAN 2.38 n/a 0.021.00 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

EMBL-EBI mean platelet volume,  platelet distribution width
GRASP advanced age-related macular degeneration (geographic atrophy),  infant head circumference,  ldl cholesterol,  total cholesterol

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