rs8106430 chr19:48660962 G>A

Sequence
ttttgcgcccctcccctctggcgt[G/A]caggccaattgttgagtgggaata
ASB in cell types
22RV1 (prostate carcinoma)
ASB for transcription factors
ARNT_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ARNT_HUMAN 2.62 -2.34 0.021.00 1.00 -4.96 Concordant
ANDR_HUMAN 2.45 0.14 0.031.00 2.00 n/a No Hit
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Motif analysis

ARNT_HUMAN Concordant
ARNT_HUMAN pic

Genetic associations

GTEx eQTL Cells_Cultured_fibroblasts,  Heart_Atrial_Appendage,  Lung,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg

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