rs8108621 chr19:32692385 G>A
- Sequence
aggaggcgggcgtgctgctgctgc[G/A]gcccaggacttccccaccaggccc
- ASB in cell types
- CD14+ monocytes BEAS-2B (bronchial epithelium) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- STAT1_HUMAN GCR_HUMAN ANDR_HUMAN SPI1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 2.24 | n/a | 3.00 | n/a | No Hit | |||
| GCR_HUMAN | 1.91 | -0.05 | 1.00 | n/a | No Hit | |||
| ANDR_HUMAN | 2.46 | -1.50 | 2.00 | n/a | No Hit | |||
| SPI1_HUMAN | 1.22 | -0.30 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood