rs8110393 chr19:38870080 G>A

Sequence
atgcggctccgcaaggcgggggcg[G/A]ggctctgcccttccggtcccggcc
ASB in cell types
foreskin keratinocyte RCC 7860 (Renal cell carcinoma) MS-1 (Small cell lung carcinoma) CUTLL1 (T-cell lymphoblastic lymphoma 1)
ASB for transcription factors
CTCF_HUMAN ZN592_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.93 1.06 1.2·10-40.90 1.33 -0.64 Weak Concordant
ZN592_HUMAN 3.08 -3.42 2.3·10-31.00 1.00 n/a n/a
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Motif analysis

CTCF_HUMAN Weak Concordant
CTCF_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Brain_Amygdala,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Liver,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

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