rs8110629 chr19:19063428 C>T
- Sequence
gccttgatggtccaagttcacatc[C/T]gcttctgtgctaggtggccagagg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- ESR1_HUMAN ETV2_HUMAN MNT_HUMAN ZN687_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 0.27 | 1.09 | 2.00 | n/a | No Hit | |||
| ETV2_HUMAN | -4.57 | 2.60 | 1.50 | -4.31 | Discordant | |||
| MNT_HUMAN | 1.49 | 0.91 | 1.83 | n/a | No Hit | |||
| ZN687_HUMAN | 2.14 | -1.81 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Thyroid