rs8110888 chr19:40349348 C>T
- Sequence
accagtcaccatccactcctcatg[C/T]ttccagttttccccataaggagcc
- ASB in cell types
- HEK293 (embryonic kidney) K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- ATF7_HUMAN GLIS1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF7_HUMAN | 2.49 | 1.21 | 2.00 | n/a | No Hit | |||
| GLIS1_HUMAN | n/a | 2.00 | 5.00 | n/a | No Hit |
Items per page:
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GRASP aortic valve calcium, cystatin c in serum, diastolic blood pressure (dbp), hdl cholesterol, hdl cholesterol change with statins, homa-b, homa-ir, microalbuminuria, salmonella-induced pyroptosis, tetrology of fallot, tourettes syndrome, triglycerides, waist hip ratio
GTEx eQTL Adipose_Subcutaneous, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Mucosa, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood