rs8110939 chr19:6372226 C>T

Sequence
cgcccggccgaggaatcaaaaaga[C/T]aaccataatgccattttcaaacct
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
MTG16_HUMAN NRF1_HUMAN TAL1_HUMAN KDM1A_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
MTG16_HUMAN n/a 1.53 1.001.6·10-5 2.00 n/a n/a
NRF1_HUMAN -1.66 2.55 1.001.3·10-3 2.00 n/a No Hit
TAL1_HUMAN -5.36 3.18 1.001.4·10-3 2.00 3.73 Concordant
KDM1A_HUMAN -0.01 0.96 0.808.3·10-3 2.00 n/a n/a
ADNP_HUMAN n/a 3.00 1.000.01 2.00 n/a n/a
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Motif analysis

TAL1_HUMAN Concordant
TAL1_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Tibial,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Liver,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Thyroid,  Whole_Blood

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