rs8111051 chr19:290947 C>A
- Sequence
cccccacctcccgggcccgcgtga[C/A]tcacctcccaggccaggcggggcg
- ASB in cell types
- MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) MDA-MB-231p27CK-DD (breast cancer cells, phosphimimetic p27 cell line) NRCC
- ASB for transcription factors
- JUN_HUMAN CDN1B_HUMAN ZHX2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 2.02 | -0.53 | 1.06 | -4.05 | Concordant | |||
| CDN1B_HUMAN | 2.21 | -0.60 | 1.00 | n/a | n/a | |||
| ZHX2_HUMAN | 2.82 | n/a | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellum, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood