rs8111313 chr19:21594045 T>A
- Sequence
tccttccttagctcagcccacgga[T/A]gggattgtgacatatctcttggcc
- ASB in cell types
- MOLM-13(acute monocytic leukemia(AML), Homo sapiens) neutrophils from periferal blood MOLM14 (Adult acute myeloid leukemia) spleen
- ASB for transcription factors
- RAD21_HUMAN CDK8_HUMAN SMC3_HUMAN CEBPA_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 2.42 | 0.06 | 2.00 | n/a | n/a | |||
| CDK8_HUMAN | -1.11 | 2.17 | 2.00 | n/a | n/a | |||
| SMC3_HUMAN | 2.79 | n/a | 2.00 | n/a | n/a | |||
| CEBPA_HUMAN | 0.25 | 3.53 | 1.30 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP biploar disorder (bipolar schizoaffective disorder), homa-ir, ldl cholesterol, waist hip ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood