rs8111400 chr19:37932114 T>C
- Sequence
agctgcattgcctctgtgagctag[T/C]gcctcctctgcacgggccaaggag
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) MS-1 (Small cell lung carcinoma) GM12891 (male B- cells lymphoblastoid cell line) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN ANDR_HUMAN NFAC3_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.04 | 2.61 | 1.24 | n/a | No Hit | |||
| STAG1_HUMAN | -0.93 | 1.75 | 1.00 | n/a | n/a | |||
| ANDR_HUMAN | -0.99 | 2.43 | 2.00 | n/a | No Hit | |||
| NFAC3_HUMAN | -2.45 | 2.39 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP 2 hour glucose, coronary artery disease (cad), diastolic blood pressure (dbp), hdl cholesterol, height, triglycerides
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid