rs8111536 chr19:46546671 A>C
- Sequence
tggaaattgcgcaagtcatgtcca[A/C]ctgcaagccactggggaggaccca
- ASB in cell types
- K562 (myelogenous leukemia) keratinocytes GM12878 (female B-cells lymphoblastoid cell line) A549 (lung carcinoma)
- ASB for transcription factors
- CEBPB_HUMAN SNAI2_HUMAN MNT_HUMAN RAD51_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CEBPB_HUMAN | 2.01 | 0.88 | 1.80 | n/a | No Hit | |||
| SNAI2_HUMAN | -2.67 | 3.15 | 1.00 | 4.43 | Concordant | |||
| MNT_HUMAN | 2.65 | -4.80 | 2.00 | n/a | No Hit | |||
| RAD51_HUMAN | 1.87 | -1.09 | 1.50 | n/a | n/a | |||
| MITF_HUMAN | 2.90 | n/a | 2.00 | n/a | No Hit |
Items per page:
1 – 5 of 17
Motif analysis
