rs8111670 chr19:38838877 C>T

Sequence
tcccctgtacctctgctgccctcc[C/T]gagcctgagcacctaccagacatt
ASB in cell types
PC9 (lung adenocarcinoma) stomach
ASB for transcription factors
CTCF_HUMAN RAD21_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.12 1.71 1.002.2·10-6 1.44 1.12 Weak Concordant
RAD21_HUMAN -0.59 1.63 1.008.6·10-3 1.00 n/a n/a
Items per page:
1 – 2 of 2

Motif analysis

CTCF_HUMAN Weak Concordant
CTCF_HUMAN pic

Genetic associations

GRASP rheumatoid arthritis,  triglycerides change with statins
GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Whole_Blood

Download