rs8113650 chr19:35006722 A>G
- Sequence
gcctctggtggttattgagcattc[A/G]ctatgtgcctagagttttgggctc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) A549 (lung carcinoma) MCF7 WS8 cells HepG2 (hepatoblastoma)
- ASB for transcription factors
- ESR1_HUMAN FOXA1_HUMAN ARI1A_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 0.18 | 1.25 | 2.20 | n/a | No Hit | |||
| FOXA1_HUMAN | 0.31 | 1.07 | 2.02 | n/a | No Hit | |||
| ARI1A_HUMAN | 0.08 | 1.44 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood