rs8115460 chr20:4369897 G>C

Sequence
gttcagcacgtatctcttgctgct[G/C]ttacccgaaaggaactgcggaaaa
ASB in cell types
monocyte-derived macrophages from peripheral blood EA.hy 926 (human umbilical vein endothelial cell line)
ASB for transcription factors
HIF1A_HUMAN SPI1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
HIF1A_HUMAN 2.71 2.08 7.7·10-50.09 1.50 n/a No Hit
SPI1_HUMAN 1.57 0.43 9.2·10-31.00 1.52 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP infant head circumference,  prostate cancer

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