rs8120609 chr20:49982737 C>G
- Sequence
tcccgccccggacagccccagcac[C/G]ggggacgacccgcgctgcgccagc
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) pancreas GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- TYY1_HUMAN EGR1_HUMAN EP400_HUMAN ELF3_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | -1.17 | 3.08 | 2.00 | n/a | No Hit | |||
| EGR1_HUMAN | 3.43 | n/a | 2.00 | n/a | No Hit | |||
| EP400_HUMAN | 2.62 | n/a | 2.00 | n/a | n/a | |||
| ELF3_HUMAN | 2.63 | -2.67 | 1.00 | n/a | No Hit | |||
| MGAP_HUMAN | 1.79 | n/a | 2.00 | 4.20 | Discordant |
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Motif analysis
