rs8121764 chr20:49812804 C>T
- Sequence
gacggagggacagagggccgccct[C/T]gcgcggccgaggccccgcctcccg
- ASB in cell types
- CD14+ monocytes SUM159PT (Triple negative breast cancer) BEAS-2B (bronchial epithelium) K562 (myelogenous leukemia)
- ASB for transcription factors
- STAT1_HUMAN GCR_HUMAN BRD2_HUMAN SPT5H_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 2.70 | -5.34 | 2.00 | n/a | No Hit | |||
| GCR_HUMAN | 1.00 | 0.33 | 2.00 | n/a | No Hit | |||
| BRD2_HUMAN | 1.96 | -1.41 | 1.00 | n/a | n/a | |||
| SPT5H_HUMAN | 2.71 | 0.65 | 1.50 | n/a | n/a | |||
| ANDR_HUMAN | 2.54 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hypothalamus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood