rs8122498 chr20:63865910 G>C

Sequence
agcctgcttaggggttgcctcatg[G/C]agagggggtggagtgagtcagggg
ASB in cell types
K562 (myelogenous leukemia) HepG2 (hepatoblastoma)
ASB for transcription factors
CEBPG_HUMAN ATF3_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CEBPG_HUMAN -2.59 2.45 1.002.2·10-3 1.75 1.02 Weak Concordant
ATF3_HUMAN n/a 1.68 1.000.04 2.00 n/a No Hit
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Motif analysis

CEBPG_HUMAN Weak Concordant
CEBPG_HUMAN pic

Genetic associations

GRASP birth weight
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Hippocampus,  Brain_Nucleus_accumbens_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Sun_Exposed_Lower_leg,  Thyroid,  Whole_Blood

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