rs8131193 chr21:45971728 G>A

Sequence
ggcctggaggccctgaacggagat[G/A]aggtctctttccacagaccagccg
ASB in cell types
HCASMC (Human coronary artery smooth muscle cells)
ASB for transcription factors
TCF21_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TCF21_HUMAN 1.61 n/a 0.021.00 3.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP hdl cholesterol,  total cholesterol,  triglycerides change with statins,  years of education
GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Nucleus_accumbens_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Thyroid,  Whole_Blood

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