rs8134369 chr21:42107916 T>C
- Sequence
cccttgtcccagctgcggggccag[T/C]gggagcagtgtgcagcgtcctgcc
- ASB in cell types
- GM02630 (Fanconi anemi) GM12878 (female B-cells lymphoblastoid cell line) upper lobe of left lung CUTLL1 (T-cell lymphoblastic lymphoma 1)
- ASB for transcription factors
- STAG1_HUMAN IKZF1_HUMAN TRI22_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 0.24 | 4.62 | 1.75 | n/a | n/a | |||
| IKZF1_HUMAN | 2.39 | 0.20 | 1.40 | n/a | n/a | |||
| TRI22_HUMAN | 2.90 | n/a | 1.00 | n/a | n/a | |||
| RAD21_HUMAN | 0.25 | 2.05 | 1.56 | n/a | n/a | |||
| IKZF2_HUMAN | 1.60 | -0.90 | 1.00 | n/a | n/a |
Items per page:
1 – 5 of 6
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Adrenal_Gland, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Substantia_nigra, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Heart_Left_Ventricle, Lung, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Whole_Blood