rs8139142 chr22:21555991 T>C
- Sequence
tcttaagcctgtatacccagccct[T/C]tgggaggcggggatgggtggagta
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) LNCaP C4-2B (prostate carcinoma) MCF10A (breast epithelial cells) HEK293 (embryonic kidney)
- ASB for transcription factors
- ESR1_HUMAN MAFG_HUMAN ZFX_HUMAN MEF2D_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 2.51 | -4.08 | 2.00 | n/a | No Hit | |||
| MAFG_HUMAN | -2.36 | 2.00 | 5.00 | n/a | No Hit | |||
| ZFX_HUMAN | 2.12 | -1.60 | 1.00 | n/a | No Hit | |||
| MEF2D_HUMAN | 2.62 | -2.74 | 5.00 | n/a | No Hit | |||
| FOS_HUMAN | 1.90 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP aortic valve calcium, body mass index (bmi), hdl cholesterol, height, mean corpuscular volume (mcv), rheumatoid arthritis, total cholesterol, triglycerides