rs8139784 chr22:41286010 G>T
- Sequence
cgtaaacaggcggcgccgccgcgt[G/T]gggggaatcgagcgcgcgcctccg
- ASB in cell types
- HEK293 (embryonic kidney) LNCaP C4-2B (prostate carcinoma) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- ZFX_HUMAN GLIS2_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZFX_HUMAN | -1.10 | 1.94 | 1.00 | n/a | No Hit | |||
| GLIS2_HUMAN | 3.17 | n/a | 2.00 | -1.40 | Weak Concordant | |||
| ANDR_HUMAN | 1.95 | -0.59 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Testis, Thyroid, Whole_Blood