rs8142462 chr22:38981477 C>T
- Sequence
gacaagcttctgtgcaggtagggg[C/T]gctgctgctccccctaccacccac
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) HMEC (human mammary epithelial cells) BEAS-2B (bronchial epithelium) MCF7L-P(immortalized breast epithelial cell line)
- ASB for transcription factors
- CTCF_HUMAN STAG2_HUMAN GCR_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.54 | -0.90 | 1.56 | -2.33 | Concordant | |||
| STAG2_HUMAN | 2.56 | n/a | 1.00 | n/a | n/a | |||
| GCR_HUMAN | 1.18 | 0.95 | 1.00 | n/a | No Hit |
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Motif analysis
