rs816949 chr20:64054849 T>C

Sequence
acaatcaacaaatccacaaacagg[T/C]gtggtgactcatgcctgtaatccc
ASB in cell types
K562 (myelogenous leukemia) keratinocytes HepG2 (hepatoblastoma)
ASB for transcription factors
EGR1_HUMAN ATF3_HUMAN SNAI2_HUMAN ARI1B_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
EGR1_HUMAN n/a 3.59 1.005.9·10-10 2.00 n/a No Hit
ATF3_HUMAN n/a 2.69 1.005.6·10-6 2.00 n/a No Hit
SNAI2_HUMAN 2.05 -0.49 3.4·10-41.00 1.50 -4.45 Concordant
ARI1B_HUMAN n/a 2.46 1.002.0·10-3 2.00 n/a n/a
KDM1A_HUMAN 0.72 2.81 1.004.6·10-3 1.50 n/a n/a
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Motif analysis

SNAI2_HUMAN Concordant
SNAI2_HUMAN pic

Genetic associations

EMBL-EBI mean corpuscular hemoglobin
GTEx eQTL Adipose_Subcutaneous,  Brain_Cerebellum,  Esophagus_Mucosa,  Lung,  Skin_Sun_Exposed_Lower_leg

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