rs817310 chr20:63949289 C>G
- Sequence
ggcgccaagacgaccaggcgaggg[C/G]ggcccgggggacagcaccactgca
- ASB in cell types
- NB69 (neuroblastoma) HepG2 (hepatoblastoma) IMR-5 (Neuroblastoma) LNCaP C4-2B (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN PKNX1_HUMAN ZF64B_HUMAN HTF4_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.31 | 0.62 | 1.38 | -3.67 | Concordant | |||
| PKNX1_HUMAN | -2.90 | 1.97 | 1.50 | n/a | No Hit | |||
| ZF64B_HUMAN | 2.27 | -1.97 | 1.00 | 0.95 | Weak Discordant | |||
| HTF4_HUMAN | n/a | 3.00 | 2.00 | n/a | No Hit | |||
| FOXP1_HUMAN | 0.59 | 1.94 | 1.25 | n/a | No Hit |
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Motif analysis
