rs817353 chr20:63981045 G>C

Sequence
cgcggccggaagtcgtcgaaccag[G/C]acgtcgggacttccgcccagggaa
ASB in cell types
CD14+ monocytes MCF7 (Invasive ductal breast carcinoma) K562 (myelogenous leukemia) neutrophils from periferal blood
ASB for transcription factors
STAT1_HUMAN CLOCK_HUMAN PATZ1_HUMAN SPI1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAT1_HUMAN 2.03 n/a 3.0·10-41.00 3.00 n/a No Hit
CLOCK_HUMAN n/a 3.69 1.004.2·10-4 2.00 n/a No Hit
PATZ1_HUMAN 2.04 -1.84 0.041.00 4.00 n/a No Hit
SPI1_HUMAN 1.46 0.28 0.041.00 2.04 n/a No Hit
TF65_HUMAN 1.89 -1.19 0.041.00 3.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Whole_Blood

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