rs8177628 chr10:5977735 C>T
- Sequence
gcaccgcacagccacccctgtccc[C/T]gggacgcatgggccgtgcccggtg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) 22RV1 (prostate carcinoma) MDA-MB-231p27CK-DD (breast cancer cells, phosphimimetic p27 cell line)
- ASB for transcription factors
- JUN_HUMAN CDN1B_HUMAN ANDR_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 0.18 | 0.97 | 1.80 | n/a | No Hit | |||
| CDN1B_HUMAN | 0.39 | 1.10 | 2.00 | n/a | n/a | |||
| ANDR_HUMAN | 2.17 | -0.11 | 1.83 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Whole_Blood