rs8177631 chr10:5977316 C>G
- Sequence
gggcaccgacgcccccgcacggcc[C/G]ggggagatggggcgcccggttccc
- ASB in cell types
- GM19238 (female B-cells lymphoblastoid cell lines) T47D (invasive ductal carcinoma) GM19239 (male B-cells lymphoblastoid cell line) GM12891 (male B- cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.11 | 2.01 | 1.18 | 0.95 | Weak Concordant | |||
| STAG1_HUMAN | 0.14 | 1.37 | 1.20 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Ovary, Pituitary, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Vagina, Whole_Blood