rs8182079 chr15:50686929 G>C
- Sequence
gcacgcgctgggcaggttcgcgcc[G/C]ccacgccgaccgcctctgggttcc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) A549 (lung carcinoma) SUM159PT (Triple negative breast cancer) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CLOCK_HUMAN ZN507_HUMAN SMAD3_HUMAN JUN_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CLOCK_HUMAN | -0.62 | 2.47 | 2.00 | n/a | No Hit | |||
| ZN507_HUMAN | -2.32 | 3.11 | 2.00 | n/a | n/a | |||
| SMAD3_HUMAN | 1.57 | -0.54 | 1.00 | n/a | No Hit | |||
| JUN_HUMAN | 1.14 | 0.69 | 1.13 | n/a | No Hit | |||
| TBP_HUMAN | 1.92 | 0.48 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Putamen_basal_ganglia, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood