rs8182300 chr17:76654526 T>C

Sequence
cacctctgctgctcaaattcttcc[T/C]gtatcttgagtcactgcttgcctc
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
TAL1_HUMAN TIF1A_HUMAN KDM1A_HUMAN MTG16_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TAL1_HUMAN n/a 2.85 1.002.2·10-3 2.00 n/a No Hit
TIF1A_HUMAN n/a 2.25 1.005.4·10-3 2.00 n/a n/a
KDM1A_HUMAN -0.29 1.21 0.985.6·10-3 2.00 n/a n/a
MTG16_HUMAN n/a 1.12 1.007.1·10-3 2.00 n/a n/a
NCOR1_HUMAN -1.01 2.50 1.008.3·10-3 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Hypothalamus,  Breast_Mammary_Tissue,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Liver,  Lung,  Muscle_Skeletal,  Pancreas,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Whole_Blood

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