rs8184100 chr20:3045769 C>T

Sequence
gaagctgttgcgtcgagttctgtc[C/T]ttcgtcccctccctgtcttccccg
ASB in cell types
primary B-CLL cells 22RV1 (prostate carcinoma) breast tumor
ASB for transcription factors
ESR1_HUMAN BRD4_HUMAN ANDR_HUMAN HIF1A_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN 2.15 n/a 0.011.00 1.75 n/a No Hit
BRD4_HUMAN 2.26 -0.80 0.011.00 1.50 n/a n/a
ANDR_HUMAN 2.13 -4.02 0.021.00 2.00 n/a No Hit
HIF1A_HUMAN 2.51 -4.74 0.041.00 2.00 n/a No Hit
PKNX1_HUMAN 2.21 -1.89 0.051.00 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP salmonella-induced pyroptosis
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Breast_Mammary_Tissue,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Liver,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Ovary,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Thyroid

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