rs8190366 chr22:42649531 T>C
- Sequence
tgcggccctctgcgctccgagctc[T/C]cccgccgctgtgctgccccgcgcg
- ASB in cell types
- 22RV1 (prostate carcinoma) GM02610 (Lymphoblastoid Cell Lines) foreskin keratinocyte IMR-5 (Neuroblastoma)
- ASB for transcription factors
- CTCF_HUMAN ANDR_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.09 | 1.84 | 1.63 | n/a | No Hit | |||
| ANDR_HUMAN | 3.13 | n/a | 2.00 | n/a | No Hit | |||
| RAD21_HUMAN | -3.55 | 2.22 | 1.33 | n/a | n/a |
Items per page:
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cerebellar_Hemisphere, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Uterus, Whole_Blood