rs8190423 chr22:42635651 G>A

Sequence
cccaacagttacaggaaacggcca[G/A]ctccgtgccatggaagcctgagat
ASB in cell types
HCASMC (Human coronary artery smooth muscle cells)
ASB for transcription factors
TCF21_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TCF21_HUMAN 2.66 -1.87 7.6·10-31.00 2.00 -3.65 Concordant
Items per page:
1 – 1 of 1

Motif analysis

TCF21_HUMAN Concordant
TCF21_HUMAN pic

Genetic associations

GRASP comorbid depressive syndrome and alcohol dependence,  ldl cholesterol,  schizophrenia
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Putamen_basal_ganglia,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Liver,  Lung,  Nerve_Tibial,  Pancreas,  Skin_Sun_Exposed_Lower_leg,  Thyroid,  Uterus,  Whole_Blood

Download