rs819146 chr20:34303394 G>T
- Sequence
ccgacgcctttaaatatcttcctc[G/T]cacttgcatattcatgacccgctg
- ASB in cell types
- HEK293 (embryonic kidney) HCT-116 (colon carcinoma) MDA-MB-453 (breast adenocarcinoma) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- PO2F1_HUMAN RBM25_HUMAN STAT1_HUMAN ANDR_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PO2F1_HUMAN | 1.51 | -1.20 | 1.00 | n/a | No Hit | |||
| RBM25_HUMAN | 1.24 | -1.15 | 1.50 | n/a | n/a | |||
| STAT1_HUMAN | -0.56 | 2.23 | 2.00 | 1.55 | Weak Concordant | |||
| ANDR_HUMAN | 2.52 | 3.28 | 3.33 | n/a | No Hit |
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Motif analysis
